Start by checking nyaa, bakaBT and madokami thoroughly. Also check available scanlations on mangaupdates. After that, googling is the next step. Since there's no one site that has everything, as you said, or everything in good quality, some obscure ass site may have the manga or quality you're looking for. Often good scans (especially re-scanlations) wouldn't get a wide release and would be available on just one site somewhere.
Just recently I've been searching for JoJo scans, and most sites, even big ones, would have shit scans, some would even have Duwang scans unironically. And then some random site on google's page 10 had what I was looking for in good quality.
Basically you'd have to lurk more quite often to get what you want.